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I have two cables with both XLR and 1/4 " jacks running from the KPA to the back of the MBox.How are you plugging the KPA into the mbox? If you are going in with spdif, you have to go into the hardware option in Pro Tools and switch the clock from internal to digital.
I'm sorry but due to my lack of knowledge with Pro Tools, you lost me.And check that is at 44.1
not sure if that is the "answer". If you have two cables running out and they are not stereo then its possibly you have two similar signals going in. This would double the volume and cause distortion. Read up on what those cables are. You want the stereo input (if you want stereo) and you also want to ensure that the stereo channels are panned left and right. If you are not doing stereo there should only be one cable required.