MorphPedal to Wah and MorphPedal to Pitch are activated by default. And this means, that your Morph Pedal controls wah effects and pedal pitch effects simultaneously to Morphing. If you trigger Morphing via button to trigger your boost, this simulates the sweep of a Morph Pedal corresponding to the Rise Time and Fall Time set. Wah Pedal and Pitch Pedal follow this simulation. This is intentional functionality.
You can either deactivate MorphPedal to Wah. This way you can control Morphing and wah effects with dedicated pedals.
Or you need to seperate Rigs, where you want to control wah effects and those where you want to use Morphing via one Morph Pedal.