Yes, that's how I typically go about it, especially since I know the Kemper is eating as much of the tone/gain as it is. My biggest motivation right now is convincing my bandmates to trust the Kemper to grab their favorite amp tones so we can streamline much of our process but the second they heard the difference between the two they were immediately put off, and I honestly can't blame them.
For a box as expensive as this that prides itself as being a profiler, not a sim or modeler like others, its primary function and selling point is the profiling. When it's so quickly easy to prove that it's loosing as much as it is and thus inherently unable to ever get the full juice of the amp, I understand my guys' reluctance to jump on board.
Obviously I'm still an advocate of the KPA and I'm still trying to spread the good word as it were but I'm the kind of person who likes to have an answer for every question as much as physically possible and I can't seem to figure this one out.
For reference, when I was profiling the Tiny Terror mentioned in my initial post, I had to raise the gain from 7 to 8 to match the tones between GTR->AMP and GTR->KPA->AMP respectively. That just seems like a lot more than a little to me but I also might just be being to picky ¯\_(ツ)_/¯