Don't know if this has been discussed...
Would it be possible to do this in a future update... to do a seperate profiling of the eq section of the real amp... When profiling, you just sweep the eq, for example the mid band from the lowest to fullest... and then continue with all the bands and maybe even the gain.
I just ordered the Kemper Rack so will probably get it next week! So maybe I won't be needing this.