Just to be clear, are you saying that the Master LED was clipping (Orange/red) but after altering the volume settings in the Master menu the clipping was reduced i.e the Master LED was no longer clipping orange/red? This confuses me I thought those settings affected external volumes being sent by the KPA rather than any internal clipping...but I'm glad it worked for you!
I think we're talking about different things - e.g clipping within the unit as opposed to clipping on external monitoring? I've struggled quite a bit with keeping the master LED from clipping.
I miss the times when there was one big knob marked volume