I definately didn't like the PRS SE pickups. I have one friend that has 2 PRS's (Custom 22 and the above 594. I have another friend with a custom 24.
Compared to my modified SE Custom 24:
1) I greatly prefer they way all the core PRS's my friends have look. No one (in their right mind) can hate on the astecic design of a PRS. They are beautiful IMO.
2) I actually prefer the way my (very well setup) SE plays, but again, that is likely more a function of the quality of my Luthier in Ann Arbor MI.
3) I also prefer my custom "Bare Knuckles" Rebel Yell pickup tone (and overtones) to any PRS pickup I have ever played.
I would also like to say that even the lowly PRS SE line guitars come stock from the factory with surprisingly good setup and feel. All PRS guitars can be made to be outstanding gig axes. I love the way they feel. Of course, ANY guitar you buy would be well served by a good setup from an accomplished luthier IMO.
FYI, I still love my strats for single coil work as I feel no humbucker can ever do what a good single coil in a strat can do; however, where I once played mostly Gibson Les Pauls for humbucker sounds, I never liked the feel and the weight. I do miss the sustain sometimes though. Just seems like those fixed bridge heavy as hell Les Pauls would ring forever with no effort what-so-ever.