Actually not true, I was surprised by this as well as given that it's just an amp sim you'd expect all the bg noise to drop out once the profiling is done, but too much noise and the KPA can't profile (it'll come up with an error), and in fact I've had Christoph even comment on how noisy a profile was that I made prior to using the external preamp. The final profile you get does remove at least some of the noise after you store it, but it seems to treat it almost as a part of the distortion if it's too high and if nothing else that skews the result.
In fact you can hear in many of the user profiles variance in noise floor even with similar gain settings (I always leave the noise gate off), which I assume is down to the cab section pushing certain noticeably noisy frequencies on those profiles.